Pacbio whole genome shotgun sequencing of genomic DNA library 'PACBIO... - SRA

SRX229077: Pacbio whole genome shotgun sequencing of genomic DNA library 'PACBIO-322' containing sample 'BAA-351' from individual 'Enterococcus pallens BAA-351'
4 PACBIO_SMRT (PacBio RS) runs: 326,964 spots, 609.2M bases, 2.4Gb downloads

UUID: 9bbcfd80-c6c5-476d-b5d7-7fc3884d54f5

Design: Pacbio sequencing of Enterococcus pallens ATCC BAA-351 via random selection

Submitted by: Broad Institute (BI)

Study: Enterococcus pallens ATCC BAA-351 Genome sequencing and assembly

PRJNA88851 • SRP021606 • All experiments • All runs

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Genome Sequencing of Enterococcus

Sample: Generic sample from Enterococcus pallens ATCC BAA-351

SAMN00809116 • SRS416711 • All experiments • All runs

Organism: Enterococcus pallens ATCC BAA-351

Library:

Name: PACBIO-322

Instrument: PacBio RS

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Spot descriptor:

1 forward

Experiment attributes: (show all 15 attributes...) (hide...)

gssr_id: 196239.0

lsid: broadinstitute.org:bsp.prod.sample:2YSXB

material_type: DNA:DNA Somatic

pacbio_rs_binding_kit: DNA/Polymerase Binding Kit 2.0 (24 Rxn)

pacbio_rs_binding_kit_barcode: 001032001672551011013

pacbio_rs_template_prep_kit: DNA Template Prep Kit 2.0 (250bp - 3Kb)

pacbio_rs_template_prep_kit_barcode: 110116001540726071812

project: D3404

root_sample_id: SM-2CGDJ

sample_id: SM-2YSXB

sequencing_protocol: Standard Sequencing

template_preparation_adaptor_sequence: ATCTCTCTCttttcctcctcctccgttgttgttgttGAGAGAGAT

template_preparation_kit_insert_size: 2200

used_binding_kit_control: true

work_request: 30532

Pipeline: show...hide...

Name	Step	Program	Version
2012-08-07 16:25:29.0	Instrument Control Version	1.3.0.50.104380
base caller	2012-08-07 22:02:29.0	Primary Analysis	NRT@172.31.128.10:8082, SwVer=13050.104380, HwVer=1.0

Runs: 4 runs, 326,964 spots, 609.2M bases, 2.4Gb

Run	# of Spots	# of Bases	Size	Published
SRR711888	81,741	108.9M	443.7Mb	2013-02-13
SRR711889	81,741	211.3M	818.6Mb	2013-02-13
SRR764547	81,741	99.3M	405.4Mb	2013-02-22
SRR766783	81,741	189.7M	739.2Mb	2013-02-27

ID:: 317822

SRA

Sequence Read Archive

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